Mapping Report of gi|549058243|emb|JB409847.1| [0,19795]

Report created with Sequana (0.1.16) and reports (0.3.0).

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Coverage

Regions of Interest

Running median is the median computed along the genome using a sliding window. The following tables give regions of interest detected by sequana. Here is some captions:

mean_cov: the average of coverage
mean_rm: the average of running median
mean_zscore: the average of zscore
max_zscore: the higher zscore contains in the region

Low coverage region

Region with a zscore lower than 2.0 and at least one base with a zscore lower than 4 are detected as low coverage region. Thus, there are 8 low coverage regions.

chr	start	end	size	mean_cov	mean_rm	mean_zscore	max_zscore
gi\|549058243\|emb\|JB409847.1\|	3553	4252	699.0	24.59	917.63	-15.77	-16.20
gi\|549058243\|emb\|JB409847.1\|	5399	6212	813.0	401.34	877.59	-8.84	-12.93
gi\|549058243\|emb\|JB409847.1\|	9344	9561	217.0	766.71	1044.03	-4.43	-4.81
gi\|549058243\|emb\|JB409847.1\|	17045	17048	3.0	1.00	1007.00	-16.18	-16.20
gi\|549058243\|emb\|JB409847.1\|	17052	17053	1.0	4.00	1006.00	-16.14	-16.14
gi\|549058243\|emb\|JB409847.1\|	17186	17525	339.0	676.79	987.30	-5.21	-6.96
gi\|549058243\|emb\|JB409847.1\|	19257	19258	1.0	13.00	962.00	-15.98	-15.98
gi\|549058243\|emb\|JB409847.1\|	19554	19722	168.0	684.32	962.00	-4.80	-5.47

High coverage region

Region with a zscore higher than 2.0 and at least on base with a zscore higher than 4 are detected as high coverage region. Thus, there are 1 high coverage regions.

chr	start	end	size	mean_cov	mean_rm	mean_zscore	max_zscore
gi\|549058243\|emb\|JB409847.1\|	4756	5020	264.0	1064.51	823.0	4.53	4.81